Books  Data Analysis & Modelling  Bioinformatics 

Bioinformatics for High Throughput Sequencing

Edited By: Naiara Rodriguez-Ezpeleta, Michael Hackenberg and Ana M Aransay

249 pages, 25 colour & 4 b/w illustrations

Springer-Verlag

Hardback | Dec 2011 | #194448 | ISBN-13: 9781461407812
Availability: Usually dispatched within 1 week Details
NHBS Price: £141.50 $182/€155 approx

About this book

Next generation sequencing is revolutionizing molecular biology. Owing to this new technology it is now possible to carry out a panoply of experiments at an unprecedented low cost and high speed. These go from sequencing whole genomes, transcriptomes and small non-coding RNAs to description of methylated regions, identification protein - DNA interaction sites and detection of structural variation. The generation of gigabases of sequence information for each of this huge bandwidth of applications in just a few days makes the development of bioinformatics applications for next generation sequencing data analysis as urgent as challenging.


Contents

Preface

- Introduction
- Overview of Sequencing Technology Platforms
- Applications of High Throughput Sequencing
- Computational Infrastructure and Basic Data Analysis for High-Throughput Sequencing
- Base-Calling for Bioinformaticians
- De Novo Short Read Assembly
- Short Read Mapping
- DNA-Protein Interaction Analysis (ChIP-Seq)
- Genome-wide Methylation Maps
- Differential Expression for RNA Sequencing (RNA-seq) Data: Mapping, Summarization, Statistical Analysis and Experimental Design
- MicroRNA Expression Profiling and Discovery
- Dissecting Splicing-Regulatory Network by Integrative Analysis of HITS-CLIP data
- Analysis of Metagenomics Data
- High Throughput Sequencing Data Analysis Software: Current State and Future Developments

Index


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