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Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS and Stan

Handbook / Manual

By: Fränzi Korner-Nievergelt(Author), Tobias Roth(Author), Stefanie von Felten(Author), Jérôme Guélat(Author), Bettina Almasi(Author), Pius Korner-Nievergelt(Author)

316 pages, colour & b/w illustrations, tables

Academic Press

Paperback | Apr 2015 | #224120 | ISBN-13: 9780128013700
Availability: Usually dispatched within 1-2 weeks Details
NHBS Price: £54.99 $72/€62 approx

About this book

Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and Stan examines the Bayesian and frequentist methods of conducting data analyses. The book provides the theoretical background in an easy-to-understand approach, encouraging readers to examine the processes that generated their data. Including discussions of model selection, model checking, and multi-model inference, the book also uses effect plots that allow a natural interpretation of data.

Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and Stan introduces Bayesian software, using R for the simple modes, and flexible Bayesian software (BUGS and Stan) for the more complicated ones. Guiding the ready from easy toward more complex (real) data analyses ina step-by-step manner, the book presents problems and solutions-including all R codes-that are most often applicable to other data and questions, making it an invaluable resource for analyzing a variety of data types.


1. Why Do We Need Statistical Models?
2. Prerequisites and Vocabulary
3. The Bayesian and Frequentist Ways of Analyzing Data
4. Normal Linear Models
5. Likelihood
6. Assessing Model Assumptions: Residual Analysis
7. Linear Mixed Effects Model LMM
8. Generalized Linear Model GLM
9. Generalized Linear Mixed Model GLMM
10. Posterior Predictive Model Checking and Proportion of Explained Variance
11. Model Selection and Multi-Model Inference
12. Markov Chain Monte Carlo Simulation (MCMC)
13. Modeling Spatial Data Using GLMM
14. Advanced Ecological Models
15. Prior Influence and Parameter Estimability
16. Checklist
17. What Should I Report in a Paper?


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Fränzi Korner-Nievergelt has been working as a statistical consultant since 2003. Dr. Korner-Nievergelt conducts research in ecology and ecological statistics at the Swiss Ornithological Institute and oikostat GmbH. Additionally, she provides data analyses for scientific projects in the public and private sector. A large part of her work involves teaching courses for scientists at scientific institutions and private organizations.

Tobias Roth is a postdoc at the University of Basel where he teaches masters level courses in statistics for ecology and biology students. In addition, Dr. Tobias Roth is co-owner and project manager at Hintermann & Weber AG, where he is responsible for data analyses and develops analytical methods for biodiversity monitoring programs.

Stefanie von Felten has a PhD in Plant Ecology and a diploma of advanced studies in statistics. Since 2010 she works as statistician at the University Hospital Basel where she is involved in planning, analysis and publication of clinical studies. In addition, Dr. von Felten is a statistical consultant for oikostat GmbH. She has been teaching statistics in several courses for Master and PhD students at various academic institutions and for doctors and other health personnel at the Hospital.

Jerome Guelat has been leading the GIS team at the Swiss Ornithological Institute for more than 6 years. He uses spatial statistics to provide guidance to applied conservation problems. He also teaches a short course on spatial and Bayesian statistics.

Bettina Almasi has a PhD in eco-physiology and ecology from the University of Zurich and a post-diploma course in applied statistics from the ETH Zurich. Dr. Almasi conducts research in stress physiology and behavioural ecology at the Swiss Ornithological Institute and works part-time as a statistical consultant at oikostat GmbH.

Pius Korner-Nievergelt has a PhD in ecology, conservation biology and a post-diploma course in applied statistics both from ETH Zurich. Dr. Korner-Nievergelt works as a statistician at oikostat GmbH as well as at the Swiss Ornithological Institute for data analyses, mainly regarding ecological questions.

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