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Provides an overview of the current state of plant genomics using a number of different approaches. Topics covered include comparative genomics, computational approaches to gene identification and annotation and data management, high throughput methodologies for functional analysis at the levels of transcript, protein and metabolite, and methods for genome modification by both homologous and site-specific recombination.
Preface. Acknowledgement. Through a genome, darkly: comparative analysis of plant chromosomal DNA; G.J. King. Plant genome evolution: lessons from comparative genomics at the DNA level; R. Schmidt. Computational gene finding in plants; M. Pertea, S.L. Salzberg. Computational modeling of gene structure in Arabidopsis thaliana; V. Brendel, W. Zhu. Surviving in a sea of data: survey of plant genome data resources and issues in building data management systems; L. Reiser, et al. Comprehensive gene expression analysis by transcript profiling; J. Donson, et al. DNA microarrays for functional plant genomics; A. Aharoni, O. Vorst. Microarray data quality analysis: lessons from the AFGC project; D. Finkelstein, et al. Large-scale plant proteomics; B. Kersten, et al. Proteomics and a future generation of plant molecular biologists; J.K.M. Roberts. Metabolomics -- the link between genotypes and phenotypes; O. Fiehn. Gene replacement by homologous recombination in plants; H. Puchta. Recombinase-directed plant transformation for the post-genomic era; D.W. Ow.