R Coding for Ecology

About this book

This book is devoted to ecological data analysis with R, with examples created by the developers of the described packages. R software is now an important reality in ecological informatics. Specific packages have been developed to manage, analyse and visualise ecological data. This book is a comprehensive catalogue of ecological R packages with running examples. This step-by-step procedure book is aimed at students and researchers with previous experience in R with a passion for coding their own ecological analyses.

Contents

Part I: Introduction
1. Introduction to the book

Part II: Species distribution modelling and Community ecology
2. The sdm R package for species distribution modelling
3. The ecospat R package: a collection of pre-, core- and post-modeling tools to investigate species niches and distributions
4. The ecodist package for dissimilarity-based analysis of ecological data
5. Sampling ecologically meaningful pseudo-absences with the USE R package
6. Rarefaction curves with Rarefy package

Part III: Ecological remote sensing
7. A plant trait-based approach to map forest biodiversity using imaging spectroscopy and physical modeling
8. Bridging remote sensing and movement ecology
9. The rasterdiv package for measuring diversity from space
10. The imageRy package for teaching remote sensing in a straightforward way

Part IV: Spatial ecology
11. The landscapemetrics and motif packages for measuring landscape patterns and processes
12. The CAST package for training and assessment of spatial prediction models
13. The cblindplot R package: Building new bridges to visually inclusive science for colourblind people
14. The cartogram package for mapping ecological patterns

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Biography

Duccio Rocchini [born in Siena in 1975] has been a Full Professor at Alma Mater Studiorum University of Bologna since December 2019, after having been an Associate Professor in Biology and Ecology at the University of Trento, Italy. He attained his PhD in 2005, dealing with remote sensing applied to the study of plant communities. His main research interests are related to plant community ecology, biodiversity analysis at multiple spatial scales, species distribution modelling, spatial and computational ecology and ecological remote sensing.

Over the years, he promoted the use of remote sensing for the study of biodiversity change in space and time, publishing more than 200 indexed papers on this topic. He is continuing this activity in projects like the H2020 SHOWCASE or the Horizon Europe B3 and EarthBridge projects.